Software

Gaius

Divide and conquer phylogenetic supermatrices and supertrees in R.

Outsider

Install and Run Programs, Outside of R, Inside of R.

restez

Create and Query a Local Copy of GenBank in R.

phylotaR

Automated Retrieval of Orthologous DNA Sequences from GenBank.

treeman

An R package for manipulating phylogentic trees.

pG-lt

phyloGenerator-lite: generate phylogenies, lightly, in python (2013)

TNR

TaxonNamesResolver: Automatically search taxon names against the Global Names Resolver (2013)

EcoDataTools

Tools for manipulating ecological data -- first ever R package! (2013).